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  5. Lfl_g23612

Lfl_g23612 (EIF4A-2)


Aliases : EIF4A-2

Description : mRNA unwinding factor *(eIF4A)) & original description: none


Gene families : OG0000532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g23612

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00181640 EIF4A-2,... Protein biosynthesis.translation initiation.mRNA... 0.03 OrthoFinder output from all 47 species
Adi_g078502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g087856 EIF4A-III not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07810 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g10607 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g39617 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g40134 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.04 OrthoFinder output from all 47 species
Aop_g13177 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g12127 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G079100.1 EIF4A-2, Ceric.21G079100 mRNA unwinding factor *(eIF4A)) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.22 EIF4A-III RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Cre03.g199647 EIF4A-III RNA processing.RNA quality control Exon Junction complex... 0.01 OrthoFinder output from all 47 species
Dde_g43100 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g36930.1 EIF4A-III, LOC_Os03g36930 helicase component eIF4A3 of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
LOC_Os06g48750.2 EIF4A-2, LOC_Os06g48750 mRNA unwinding factor (eIF4A) 0.04 OrthoFinder output from all 47 species
Mp2g02760.1 EIF4A-2 mRNA unwinding factor (eIF4A) 0.05 OrthoFinder output from all 47 species
Pir_g14903 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Pir_g30079 EIF4A-2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10144 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c6_1080V3.1 EIF4A-2, Pp3c6_1080 eukaryotic translation initiation factor 4A1 0.02 OrthoFinder output from all 47 species
Pp3s93_30V3.1 EIF4A-2, Pp3s93_30 eukaryotic translation initiation factor 4A1 0.01 OrthoFinder output from all 47 species
Ppi_g03000 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Ppi_g15917 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g23496 No alias mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Smo143895 EIF4A-2 Protein biosynthesis.translation initiation.mRNA... 0.03 OrthoFinder output from all 47 species
Solyc06g062800.4.1 EIF4A-2, Solyc06g062800 mRNA unwinding factor (eIF4A) 0.02 OrthoFinder output from all 47 species
Solyc07g040750.2.1 EIF4A-2, Solyc07g040750 mRNA unwinding factor (eIF4A) 0.04 OrthoFinder output from all 47 species
Solyc08g062800.3.1 EIF4A-2, Solyc08g062800 mRNA unwinding factor (eIF4A) 0.06 OrthoFinder output from all 47 species
Tin_g05567 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e023523_P001 EIF4A-III, Zm00001e023523 helicase component eIF4A3 of RNA quality control Exon... 0.01 OrthoFinder output from all 47 species
Zm00001e030233_P004 EIF4A-2, Zm00001e030233 mRNA unwinding factor (eIF4A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000270 peptidoglycan metabolic process IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003779 actin binding IEP HCCA
BP GO:0006022 aminoglycan metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
BP GO:0009254 peptidoglycan turnover IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0030203 glycosaminoglycan metabolic process IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 21 182
IPR001650 Helicase_C 222 330
No external refs found!