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  5. Lfl_g23586

Lfl_g23586 (P40, AP40, RPSAA, RP40)


Aliases : P40, AP40, RPSAA, RP40

Description : component *(uS2) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002043 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g23586

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00244660 P40, AP40,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AMTR_s00041p00084080 P40, AP40,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
AT1G72370 P40, AP40, RPSAA, RP40 40s ribosomal protein SA 0.04 OrthoFinder output from all 47 species
Aob_g27227 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g07397 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.10G044300.1 P40, AP40,... component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.38G026900.1 P40, AP40,... component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cre10.g432800 P40, AP40, RPSAA, RP40 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dac_g13313 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
LOC_Os07g42450.1 P40, AP40,... component RPSa of SSU proteome 0.02 OrthoFinder output from all 47 species
MA_112104g0010 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp2g26290.1 P40, AP40, RPSAA, RP40 component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
Pp3c14_15700V3.1 P40, AP40,... 40s ribosomal protein SA B 0.02 OrthoFinder output from all 47 species
Pp3c14_17310V3.1 P40, AP40,... 40s ribosomal protein SA B 0.02 OrthoFinder output from all 47 species
Pp3c17_17600V3.1 P40, AP40,... 40s ribosomal protein SA 0.02 OrthoFinder output from all 47 species
Ppi_g45150 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g05957 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g08753 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g08754 No alias component *(uS2) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Solyc03g019780.4.1 P40, AP40,... component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
Solyc06g072120.3.1 P40, AP40,... component RPSa of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g04678 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g21179 P40, AP40, RPSAA, RP40 component *(uS2) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e000273_P001 P40, AP40,... component RPSa of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e010780_P001 P40, AP40,... component RPSa of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e038859_P001 P40, AP40,... component RPSa of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e038860_P002 P40, AP40,... component RPSa of SSU proteome 0.01 OrthoFinder output from all 47 species
Zm00001e038933_P001 P40, AP40,... component RPSa of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0007021 tubulin complex assembly IEP HCCA
BP GO:0007023 post-chaperonin tubulin folding pathway IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0048487 beta-tubulin binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR032281 40S_SA_C 197 285
IPR001865 Ribosomal_S2 113 177
IPR001865 Ribosomal_S2 13 106
No external refs found!