Aob_g19967 (DCL1, CAF, EMB76,...)

Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : endoribonuclease (DCL2) of transacting siRNA pathway & original description: none

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g19967

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00033p00127000	ATDCL3, DCL3,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.05	OrthoFinder output from all 47 species
Als_g22807	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
Aspi01Gene32281.t1	DCL4, ATDCL4,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Dcu_g08330	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Ehy_g15817	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
LOC_Os09g14610.1	ATDCL2, DCL2,...	Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Lfl_g03508	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Lfl_g06763	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Pp3c1_24960V3.1	DCL1, CAF,...	dicer-like 1	0.01	OrthoFinder output from all 47 species
Smo444049	DCL1, CAF,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.04	OrthoFinder output from all 47 species
Smo74321	DCL4, ATDCL4	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.02	OrthoFinder output from all 47 species
Solyc07g005030.4.1	DCL4, ATDCL4,...	endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1...	0.04	OrthoFinder output from all 47 species
Zm00001e018890_P004	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005985	sucrose metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
MF	GO:0016157	sucrose synthase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003100	PAZ_dom	969	1097
IPR001650	Helicase_C	452	565
IPR011545	DEAD/DEAH_box_helicase_dom	96	258
IPR000999	RNase_III_dom	1139	1274
IPR000999	RNase_III_dom	1353	1466

External Links

No external refs found!

Aob_g19967 (DCL1, CAF, EMB76,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation