Aob_g18677 (ATCBP80, ABH1, ENS, CBP80)

Aliases : ATCBP80, ABH1, ENS, CBP80

Description : component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex & original description: none

Gene families : OG0004633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004633_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g18677

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00245860	ATCBP80, ABH1,...	RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA...	0.03	OrthoFinder output from all 47 species
Als_g01146	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.02	OrthoFinder output from all 47 species
Cre12.g524100	No alias	RNA processing.RNA 5-end cap adding.CBP80-CBP20 mRNA...	0.04	OrthoFinder output from all 47 species
Len_g07985	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.03	OrthoFinder output from all 47 species
MA_13750g0010	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)	0.02	OrthoFinder output from all 47 species
Mp1g05560.1	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)	0.03	OrthoFinder output from all 47 species
Sam_g12525	No alias	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.04	OrthoFinder output from all 47 species
Sam_g28009	No alias	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.02	OrthoFinder output from all 47 species
Spa_g26897	ATCBP80, ABH1, ENS, CBP80	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex...	0.03	OrthoFinder output from all 47 species
Zm00001e001643_P004	ATCBP80, ABH1,...	component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex (CBC)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005669	transcription factor TFIID complex	IEP	HCCA
CC	GO:0005681	spliceosomal complex	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003890	MIF4G-like_typ-3	38	200
IPR015174	MIF4G-like_typ-2	495	814
IPR015172	MIF4G-like_typ-1	329	460

External Links

No external refs found!