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  5. Aob_g17694

Aob_g17694 (GTB1)


Aliases : GTB1

Description : component *(SPT6) of SPT6-IWS1 transcription elongation complex & original description: none


Gene families : OG0001807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g17694
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00136890 GTB1,... Chromatin organisation.histone chaperone... 0.03 OrthoFinder output from all 47 species
AT1G65440 GTB1 global transcription factor group B1 0.09 OrthoFinder output from all 47 species
Adi_g055496 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Aev_g43821 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Ala_g25347 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Ala_g37718 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Als_g61446 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Aop_g31491 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Azfi_s0254.g060416 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Azfi_s0351.g066576 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Ceric.21G005900.1 GTB1, Ceric.21G005900 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.13 OrthoFinder output from all 47 species
Ceric.30G057400.1 Ceric.30G057400 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001486.8 GTB1 Chromatin organisation.histone chaperone... 0.03 OrthoFinder output from all 47 species
Cre09.g403182 GTB1 Chromatin organisation.histone chaperone... 0.05 OrthoFinder output from all 47 species
Dac_g22241 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Dcu_g14255 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.1 OrthoFinder output from all 47 species
Dcu_g19973 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Dde_g17217 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
GSVIVT01025815001 GTB1 Chromatin organisation.histone chaperone... 0.04 OrthoFinder output from all 47 species
Gb_29261 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.05 OrthoFinder output from all 47 species
LOC_Os05g41510.1 GTB1, LOC_Os05g41510 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.03 OrthoFinder output from all 47 species
Len_g19196 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Lfl_g05758 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
MA_13648g0020 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.03 OrthoFinder output from all 47 species
Mp2g25720.1 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.08 OrthoFinder output from all 47 species
Msp_g42177 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Msp_g43712 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Nbi_g05486 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Nbi_g34788 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Ore_g08934 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Ppi_g31322 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Ppi_g60722 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Sam_g13993 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Smo164675 GTB1 Chromatin organisation.histone chaperone... 0.03 OrthoFinder output from all 47 species
Solyc10g081020.2.1 GTB1, Solyc10g081020 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.04 OrthoFinder output from all 47 species
Spa_g16432 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Spa_g47531 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Tin_g02913 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Tin_g21814 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Zm00001e032018_P003 GTB1, Zm00001e032018 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR028088 Spt6_HTH_DNA-bd_dom 395 507
IPR028083 Spt6_acidic_N_dom 99 192
IPR028231 Spt6_YqgF 818 968
IPR032706 Spt6_HHH 972 1074
IPR035420 Spt6_SH2 1293 1510
IPR041692 HHH_9 1088 1180
No external refs found!