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  5. Aob_g16762

Aob_g16762 (GC5)


Aliases : GC5

Description : Golgin-type membrane tethering protein *(GC5/TMF) & original description: none


Gene families : OG0003150 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003150_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g16762

Target Alias Description ECC score Gene Family Method Actions
AT1G79830 GC5 golgin candidate 5 0.03 OrthoFinder output from all 47 species
Adi_g103700 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.04 OrthoFinder output from all 47 species
Aev_g29811 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.03 OrthoFinder output from all 47 species
Ala_g08575 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.02 OrthoFinder output from all 47 species
Ala_g34700 GC5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g09947 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.06 OrthoFinder output from all 47 species
Aop_g09136 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13725.t1 GC5, Aspi01Gene13725 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63977.t1 GC5, Aspi01Gene63977 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0092.g043112 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.04 OrthoFinder output from all 47 species
Ceric.20G030700.1 GC5, Ceric.20G030700 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.04 OrthoFinder output from all 47 species
Cre03.g187000 GC5 Golgin candidate 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre09.g400812 No alias No description available 0.02 OrthoFinder output from all 47 species
Dde_g23623 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.02 OrthoFinder output from all 47 species
Ehy_g07090 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01038690001 GC5 Vesicle trafficking.target membrane tethering.Golgi... 0.05 OrthoFinder output from all 47 species
Len_g10407 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.05 OrthoFinder output from all 47 species
Mp8g06100.1 GC5 golgin (GC5/TMF) 0.01 OrthoFinder output from all 47 species
Msp_g15520 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.02 OrthoFinder output from all 47 species
Pir_g14288 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.05 OrthoFinder output from all 47 species
Ppi_g22247 GC5 Golgin-type membrane tethering protein *(GC5/TMF) &... 0.02 OrthoFinder output from all 47 species
Solyc06g066610.4.1 GC5, Solyc06g066610 golgin (GC5/TMF) 0.02 OrthoFinder output from all 47 species
Zm00001e026510_P001 GC5, Zm00001e026510 Golgin candidate 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e032402_P001 GC5, Zm00001e032402 golgin (GC5/TMF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0017025 TBP-class protein binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0140296 general transcription initiation factor binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR022091 TMF_TATA-bd 816 916
IPR022092 TMF_DNA-bd 396 466
No external refs found!