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  5. Aob_g13725

Aob_g13725 (U1-70K, U1SNRNP)


Aliases : U1-70K, U1SNRNP

Description : component *(U1-70K) of U1 snRNP complex & original description: none


Gene families : OG0003392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003392_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g13725
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
Adi_g076917 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Als_g10647 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0390.g067692 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Azfi_s2260.g110011 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.01G033200.1 U1-70K, U1SNRNP,... component *(U1-70K) of U1 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001333.27 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Dcu_g10772 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Dde_g50672 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01018981001 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
LOC_Os10g02630.1 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
MA_10426294g0010 U1-70K, U1SNRNP component U1-70K of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Mp1g03510.1 U1-70K, U1SNRNP component U1-70K of U1 small nuclear ribonucleoprotein... 0.01 OrthoFinder output from all 47 species
Pnu_g03596 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Pnu_g11483 U1-70K, U1SNRNP component *(U1-70K) of U1 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Sam_g15737 No alias component *(U1-70K) of U1 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Smo58751 U1-70K, U1SNRNP RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Solyc02g085420.4.1 U1-70K, U1SNRNP,... component U1-70K of U1 small nuclear ribonucleoprotein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 140 209
IPR022023 U1snRNP70_N 41 129
No external refs found!