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  5. Aob_g12863

Aob_g12863 (SMP1)


Aliases : SMP1

Description : splicing factor *(SMP) & original description: none


Gene families : OG0003342 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003342_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g12863

Target Alias Description ECC score Gene Family Method Actions
Ala_g08921 SMP1 splicing factor *(SMP) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03712 SMP2 splicing factor *(SMP) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.42 SMP2 Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Ehy_g08440 SMP1 splicing factor *(SMP) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01027813001 SMP1 Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica 0.04 OrthoFinder output from all 47 species
Len_g19662 SMP1 splicing factor *(SMP) & original description: none 0.05 OrthoFinder output from all 47 species
Mp1g12350.1 SMP1 Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
Solyc09g072570.3.1 SMP1, Solyc09g072570 Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Zm00001e029263_P001 SMP1, Zm00001e029263 Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR021715 Slu7_dom 136 403
No external refs found!