Aob_g12306 (G2484-1, ATG2484-1)


Aliases : G2484-1, ATG2484-1

Description : not classified & original description: none


Gene families : OG0002573 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002573_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g12306
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00148070 G2484-1,... No description available 0.03 OrthoFinder output from all 47 species
AT4G17330 G2484-1, ATG2484-1 G2484-1 protein 0.05 OrthoFinder output from all 47 species
Adi_g077944 G2484-1, ATG2484-1 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aev_g07336 G2484-1, ATG2484-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g27665 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12999 G2484-1, ATG2484-1 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g23052 G2484-1, ATG2484-1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g33986 G2484-1, ATG2484-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g64007 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g09060 G2484-1, ATG2484-1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene43305.t2 G2484-1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0099.g044091 G2484-1, ATG2484-1 not classified & original description: CDS=19-6000 0.03 OrthoFinder output from all 47 species
Cba_g22302 G2484-1, ATG2484-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.36G054700.1 Ceric.36G054700 not classified & original description: pacid=50568782... 0.04 OrthoFinder output from all 47 species
Dac_g20555 G2484-1, ATG2484-1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g12709 G2484-1, ATG2484-1 not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ehy_g27148 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01004716001 G2484-1, ATG2484-1 No description available 0.07 OrthoFinder output from all 47 species
Gb_04223 G2484-1, ATG2484-1 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_15039 G2484-1, ATG2484-1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os10g41030.1 G2484-1,... no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g14749 G2484-1, ATG2484-1 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g03523 G2484-1, ATG2484-1 not classified & original description: none 0.09 OrthoFinder output from all 47 species
MA_20337g0010 G2484-1, ATG2484-1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g01160.1 G2484-1, ATG2484-1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g39520 G2484-1, ATG2484-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09007 G2484-1, ATG2484-1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g12137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g12170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25098 G2484-1, ATG2484-1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g39400 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09835 G2484-1, ATG2484-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16311 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014511 G2484-1, ATG2484-1 not classified & original description: CDS=645-7112 0.02 OrthoFinder output from all 47 species
Sam_g18066 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo415212 G2484-1, ATG2484-1 No description available 0.06 OrthoFinder output from all 47 species
Solyc08g078530.4.1 G2484-1,... no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g29421 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g33264 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g49740 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08474 G2484-1, ATG2484-1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002323_P004 G2484-1,... no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008395 Agenet-like_dom 2186 2250
No external refs found!