Aob_g12108 (PAT2)

Aliases : PAT2

Description : large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex & original description: none

Gene families : OG0006164 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006164_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aob_g12108
Cluster	HCCA: Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
Adi_g077141	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo...	0.03	OrthoFinder output from all 47 species
Aev_g10362	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo...	0.02	OrthoFinder output from all 47 species
Azfi_s0366.g066967	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo...	0.02	OrthoFinder output from all 47 species
Ceric.28G061600.1	PAT2, Ceric.28G061600	large subunit beta of AP-3 Golgi to vacuole cargo...	0.03	OrthoFinder output from all 47 species
Dcu_g19428	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo...	0.02	OrthoFinder output from all 47 species
Gb_19472	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex	0.02	OrthoFinder output from all 47 species
MA_175737g0010	PAT2	AP3-complex subunit beta-A OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp6g07170.1	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex	0.02	OrthoFinder output from all 47 species
Ore_g20296	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010874	PAT2	large subunit beta of AP-3 Golgi to vacuole cargo...	0.03	OrthoFinder output from all 47 species
Smo118138	PAT2	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	OrthoFinder output from all 47 species
Solyc06g043030.4.1	PAT2, Solyc06g043030	large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex	0.02	OrthoFinder output from all 47 species
Zm00001e029209_P001	PAT2, Zm00001e029209	large subunit beta of AP-3 Golgi to vacuole cargo adaptor complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005096	GTPase activator activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006406	mRNA export from nucleus	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0015693	magnesium ion transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051028	mRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR029390	AP3B_C	934	1056
IPR002553	Clathrin/coatomer_adapt-like_N	36	492
IPR002553	Clathrin/coatomer_adapt-like_N	535	675

External Links

No external refs found!

Aob_g12108 (PAT2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation