Lfl_g22208 (ATRPS13A, RPS13, PFL2, RPS13A)


Aliases : ATRPS13A, RPS13, PFL2, RPS13A

Description : component *(uS15) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0000529 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g22208
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Ala_g06976 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Als_g18408 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Aop_g01920 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Aop_g41112 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 39 species
Aspi01Gene58740.t1 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Azfi_s0288.g063234 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Ceric.14G028200.1 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Dcu_g05283 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Mp4g03410.1 ATRPS13A, RPS13,... component RPS13 of SSU proteome 0.01 OrthoFinder output from all 39 species
Msp_g04964 No alias not classified & original description: none 0.03 OrthoFinder output from all 39 species
Msp_g28279 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Msp_g34165 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Nbi_g15982 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Pir_g63479 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Sam_g37409 No alias component *(uS15) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Spa_g01293 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 39 species
Spa_g03180 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 39 species
Spa_g56598 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 39 species
Tin_g22858 ATRPS13A, RPS13,... component *(uS15) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 39 species
Tin_g28617 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0043167 ion binding IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR012606 Ribosomal_S13/S15_N 1 60
IPR000589 Ribosomal_S15 83 146
No external refs found!