Lfl_g22208 (ATRPS13A, RPS13, PFL2, RPS13A)

Aliases : ATRPS13A, RPS13, PFL2, RPS13A

Description : component *(uS15) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001931 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001931_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g22208
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00029190	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AT3G60770	No alias	Ribosomal protein S13/S15	0.07	OrthoFinder output from all 47 species
AT4G00100	ATRPS13A, RPS13,...	ribosomal protein S13A	0.08	OrthoFinder output from all 47 species
Adi_g074584	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g074585	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g06976	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g41112	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0075.g037655	No alias	not classified & original description: CDS=1-246	0.04	OrthoFinder output from all 47 species
Azfi_s0288.g063234	No alias	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g50978	No alias	component *(uS15) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Ceric.14G028200.1	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000489.15	ATRPS13A, RPS13,...	40S ribosomal protein S13 OS=Glycine max	0.01	OrthoFinder output from all 47 species
Cre07.g331900	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.07	OrthoFinder output from all 47 species
Dde_g46907	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ehy_g08861	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01018537001	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01027637001	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Gb_18181	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.03	OrthoFinder output from all 47 species
LOC_Os08g02400.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os08g02410.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.07	OrthoFinder output from all 47 species
Len_g05038	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Mp4g03410.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.07	OrthoFinder output from all 47 species
Msp_g28279	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c16_15220V3.1	ATRPS13A, RPS13,...	ribosomal protein S13A	0.02	OrthoFinder output from all 47 species
Pp3c7_26720V3.1	ATRPS13A, RPS13,...	ribosomal protein S13A	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016899	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g20369	No alias	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g37409	No alias	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo440805	ATRPS13A, RPS13,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Solyc01g091220.3.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.05	OrthoFinder output from all 47 species
Solyc03g083530.3.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc05g051000.3.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc10g018250.2.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc11g072260.2.1	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.06	OrthoFinder output from all 47 species
Spa_g01293	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Spa_g03180	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Spa_g56598	ATRPS13A, RPS13,...	component *(uS15) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e021837_P003	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e021839_P001	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.04	OrthoFinder output from all 47 species
Zm00001e029210_P002	ATRPS13A, RPS13,...	component RPS13 of SSU proteome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0008199	ferric iron binding	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0061630	ubiquitin protein ligase activity	IEP	HCCA
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012606	Ribosomal_S13/S15_N	1	60
IPR000589	Ribosomal_S15	83	146

External Links

No external refs found!

Lfl_g22208 (ATRPS13A, RPS13, PFL2, RPS13A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation