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  5. Aob_g07311

Aob_g07311


Description : not classified & original description: none


Gene families : OG0004930 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g07311
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00149p00067630 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46580,... 0.02 OrthoFinder output from all 47 species
AMTR_s00149p00067730 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g113698 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Aev_g08632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08499 EMB2750 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene39761.t1 Aspi01Gene39761 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g15325 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g14136 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17091 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07226 SVR7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003493001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder output from all 47 species
GSVIVT01003496001 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.02 OrthoFinder output from all 47 species
Gb_19282 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.02 OrthoFinder output from all 47 species
LOC_Os03g11670.1 SVR7, LOC_Os03g11670 Pentatricopeptide repeat-containing protein ATP4... 0.03 OrthoFinder output from all 47 species
Len_g02383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05655 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_283144g0010 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species
Nbi_g01171 SVR7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12890 SVR7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g11215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo10825 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.03 OrthoFinder output from all 47 species
Smo442013 No alias Pentatricopeptide repeat-containing protein At5g46580,... 0.06 OrthoFinder output from all 47 species
Solyc08g077140.1.1 Solyc08g077140 Pentatricopeptide repeat-containing protein At5g46580,... 0.04 OrthoFinder output from all 47 species
Zm00001e000850_P001 SVR7, Zm00001e000850 Pentatricopeptide repeat-containing protein ATP4,... 0.04 OrthoFinder output from all 47 species
Zm00001e006409_P001 Zm00001e006409 Pentatricopeptide repeat-containing protein At5g46580,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 217 259
IPR002885 Pentatricopeptide_repeat 145 189
IPR002885 Pentatricopeptide_repeat 284 333
IPR002885 Pentatricopeptide_repeat 357 385
IPR002885 Pentatricopeptide_repeat 394 422
IPR002885 Pentatricopeptide_repeat 430 455
No external refs found!