MA_12435g0010


Description : 11.8.1 lipid metabolism.exotics (steroids, squalene etc).sphingolipids Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion. long-chain base1 (LCB1)


Gene families : OG_01_0002285 (Gene family) Phylogenetic Tree(s): OG0002285_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_12435g0010
Cluster HCCA cluster: Cluster_450

Target Alias Description ECC score Gene Family Method Actions
Cre03.g146507 No alias 11.8.1 lipid metabolism.exotics (steroids, squalene... 0.03 Gene family
LOC_Os03g14800 Os03g0252800 11.8.1 lipid metabolism.exotics (steroids, squalene... 0.02 Gene family
Zm00001d047908 GRMZM2G144985 11.8.1 lipid metabolism.exotics (steroids, squalene... 0.04 Gene family

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA InterProScan
MF GO:0030170 pyridoxal phosphate binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004839 Aminotransferase_I/II 59 194
No external refs found!