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  5. Aob_g04785

Aob_g04785 (HIS1-3)


Aliases : HIS1-3

Description : linker histone *(H1) & original description: none


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g04785

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.02 OrthoFinder output from all 47 species
Adi_g003228 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g35464 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g25617 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g60256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10645.t1 Aspi01Gene10645 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.33G008300.1 Ceric.33G008300 linker histone *(H1) & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g29487 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g20176 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06319 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g14931 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e032965_P005 Zm00001e032965 linker histone (H1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 60 124
No external refs found!