1. Home
  2. Species
  3. Abrodictyum obscurum
  4. Sequence
  5. Aob_g04491

Aob_g04491 (TTN8, ATSMC1, SMC1)


Aliases : TTN8, ATSMC1, SMC1

Description : component *(SMC1/TTN8) of cohesin regulator complex & original description: none


Gene families : OG0004293 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004293_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g04491
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00208850 TTN8, ATSMC1,... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
AT3G54670 TTN8, ATSMC1, SMC1 Structural maintenance of chromosomes (SMC) family protein 0.04 OrthoFinder output from all 47 species
Adi_g010815 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Ala_g02668 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Als_g01964 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Azfi_s0002.g001113 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Cba_g04090 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Ceric.32G063300.1 TTN8, ATSMC1,... component *(SMC1/TTN8) of cohesin regulator complex &... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.145 TTN8, ATSMC1, SMC1 Cell cycle.mitosis and meiosis.sister chromatid... 0.01 OrthoFinder output from all 47 species
Dcu_g05826 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.06 OrthoFinder output from all 47 species
Ehy_g01679 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
GSVIVT01028343001 TTN8, ATSMC1, SMC1 Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
LOC_Os12g44390.1 TTN8, ATSMC1,... component SMC1/TTN8 of cohesin regulator complex 0.05 OrthoFinder output from all 47 species
Lfl_g03468 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.02 OrthoFinder output from all 47 species
Msp_g15568 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Ore_g08908 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Ore_g13217 TTN8, ATSMC1, SMC1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g11833 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Ppi_g01407 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012930 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.03 OrthoFinder output from all 47 species
Solyc06g083870.3.1 TTN8, ATSMC1,... component SMC1/TTN8 of cohesin regulator complex 0.04 OrthoFinder output from all 47 species
Tin_g02901 TTN8, ATSMC1, SMC1 component *(SMC1/TTN8) of cohesin regulator complex &... 0.05 OrthoFinder output from all 47 species
Zm00001e003843_P001 TTN8, ATSMC1,... component SMC1/TTN8 of cohesin regulator complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 10 1203
IPR010935 SMC_hinge 517 633
No external refs found!