1. Home
  2. Species
  3. Abrodictyum obscurum
  4. Sequence
  5. Aob_g03621

Aob_g03621


Description : component *(UPF2) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0003692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003692_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g03621

Target Alias Description ECC score Gene Family Method Actions
Aev_g28134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20588 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aop_g06089 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cre17.g729250 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Dac_g09761 No alias component *(UPF2) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Ehy_g07950 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010188 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g36558 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Solyc04g049770.4.1 Solyc04g049770 component UPF2 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Spa_g12526 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e015177_P002 Zm00001e015177 component UPF2 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007193 Upf2/Nmd2_C 1041 1175
IPR003890 MIF4G-like_typ-3 511 692
IPR003890 MIF4G-like_typ-3 713 907
No external refs found!