Aliases : ATPRP40A, PRP40A
Description : pre-mRNA-processing protein *(PRP40A/B) & original description: none
Gene families : OG0002189 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002189_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00010p00227470 | ATPRP40A,... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.04 | OrthoFinder output from all 47 species | |
AT1G44910 | ATPRP40A, PRP40A | pre-mRNA-processing protein 40A | 0.02 | OrthoFinder output from all 47 species | |
AT3G19670 | ATPRP40B, PRP40B | pre-mRNA-processing protein 40B | 0.03 | OrthoFinder output from all 47 species | |
Adi_g079667 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g02608 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g12867 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g14297 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g27081 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g05967 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.06G057100.1 | ATPRP40A,... | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.36G014500.1 | ATPRP40A,... | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.06 | OrthoFinder output from all 47 species | |
Cre07.g351000 | ATPRP40A, PRP40A | RNA processing.RNA splicing.U2-type-intron-specific... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g31177 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g33711 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Dde_g04452 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g02927 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g29464 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01009302001 | ATPRP40A, PRP40A | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
Gb_14217 | ATPRP40A, PRP40A | pre-mRNA-processing protein (PRP40A/B) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os01g34780.1 | ATPRP40A,... | pre-mRNA-processing protein (PRP40A/B) | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g04256 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g08148 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
MA_8888g0010 | ATPRP40A, PRP40A | pre-mRNA-processing protein (PRP40A/B) | 0.03 | OrthoFinder output from all 47 species | |
Mp2g00410.1 | ATPRP40A, PRP40A | pre-mRNA-processing protein (PRP40A/B) | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g29655 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g17451 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g37601 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g40944 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g15971 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Pir_g18693 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g01375 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g08690 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0203.g025648 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Sam_g13746 | No alias | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g40479 | No alias | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Solyc07g022760.4.1 | ATPRP40A,... | pre-mRNA-processing protein (PRP40A/B) | 0.06 | OrthoFinder output from all 47 species | |
Spa_g09384 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g10390 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e020775_P002 | ATPRP40A,... | pre-mRNA-processing protein (PRP40A/B) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e020778_P001 | ATPRP40A,... | pre-mRNA-processing protein (PRP40A/B) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003682 | chromatin binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003743 | translation initiation factor activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0004674 | protein serine/threonine kinase activity | IEP | HCCA |
CC | GO:0005681 | spliceosomal complex | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006413 | translational initiation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |