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  5. Aob_g01607

Aob_g01607


Description : not classified & original description: none


Gene families : OG0001703 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aob_g01607

Target Alias Description ECC score Gene Family Method Actions
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.03 OrthoFinder output from all 47 species
Ceric.06G021600.1 Ceric.06G021600 not classified & original description: pacid=50619132... 0.03 OrthoFinder output from all 47 species
Ceric.17G072400.1 AtRH36, SWA3,... SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g36206 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.03 OrthoFinder output from all 47 species
Spa_g06006 AtRH36, SWA3, RH36 SSU processome assembly factor *(SWA3) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 42 209
IPR001650 Helicase_C 247 352
No external refs found!