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  5. Dde_g52073

Dde_g52073


Description : splicing factor *(SR45a) & original description: none


Gene families : OG0001089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g52073
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AT4G35785 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Ceric.18G028600.1 Ceric.18G028600 splicing factor *(SR45a) & original description:... 0.03 OrthoFinder output from all 47 species
Mp8g15180.1 No alias Serine/arginine-rich splicing factor SR45a... 0.02 OrthoFinder output from all 47 species
Msp_g17120 No alias splicing factor *(SR45a) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12839 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g31276 No alias splicing factor *(SR45a) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e022330_P003 Zm00001e022330 Serine/arginine-rich splicing factor SR45a... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0009029 tetraacyldisaccharide 4'-kinase activity IEP HCCA
BP GO:0009245 lipid A biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046493 lipid A metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901269 lipooligosaccharide metabolic process IEP HCCA
BP GO:1901271 lipooligosaccharide biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 137 206
No external refs found!