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  5. Dde_g46327

Dde_g46327


Description : type-Ia DNA topoisomerase & original description: none


Gene families : OG0003699 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003699_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g46327

Target Alias Description ECC score Gene Family Method Actions
AT4G31210 No alias DNA topoisomerase, type IA, core 0.02 OrthoFinder output from all 47 species
Als_g48687 No alias type-Ia DNA topoisomerase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24211.t1 Aspi01Gene24211 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0066.g036119 No alias type-Ia DNA topoisomerase & original description: CDS=286-3858 0.03 OrthoFinder output from all 47 species
Cba_g78123 No alias type-Ia DNA topoisomerase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G084900.1 Ceric.01G084900 not classified & original description: pacid=50591868... 0.01 OrthoFinder output from all 47 species
Ceric.1Z079000.1 Ceric.1Z079000 type-Ia DNA topoisomerase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.22G057500.1 Ceric.22G057500 type-Ia DNA topoisomerase & original description:... 0.03 OrthoFinder output from all 47 species
Cre10.g442850 No alias Cell cycle.organelle machineries.DNA replication.type-Ia... 0.01 OrthoFinder output from all 47 species
Dcu_g02044 No alias type-Ia DNA topoisomerase & original description: none 0.02 OrthoFinder output from all 47 species
Gb_30151 No alias type-Ia DNA topoisomerase 0.03 OrthoFinder output from all 47 species
MA_10029522g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g21728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g49243 No alias type-Ia DNA topoisomerase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0226.g026330 No alias type-Ia DNA topoisomerase & original description: CDS=286-4206 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR013497 Topo_IA_cen 294 732
IPR025589 Toprim_C_rpt 844 901
IPR025589 Toprim_C_rpt 903 952
IPR013498 Topo_IA_Znf 776 811
IPR006171 TOPRIM_domain 162 276
No external refs found!