Lfl_g19049 (AtHPR1, AtTHO1, THO1, HPR1)


Aliases : AtHPR1, AtTHO1, THO1, HPR1

Description : component *(THOC1/HPR1) of mRNP trafficking THO subcomplex & original description: none


Gene families : OG0005828 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005828_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g19049

Target Alias Description ECC score Gene Family Method Actions
Aev_g07899 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Aspi01Gene64611.t1 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Ceric.1Z091900.1 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001229.4 AtHPR1, AtTHO1,... RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder output from all 47 species
Cre16.g695300 AtHPR1, AtTHO1,... RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Dcu_g09998 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Gb_11418 AtHPR1, AtTHO1,... component THOC1/HPR1 of mRNP trafficking THO subcomplex 0.02 OrthoFinder output from all 47 species
LOC_Os03g01970.1 AtHPR1, AtTHO1,... component THOC1/HPR1 of mRNP trafficking THO subcomplex 0.03 OrthoFinder output from all 47 species
Sam_g15781 No alias component *(THOC1/HPR1) of mRNP trafficking THO... 0.03 OrthoFinder output from all 47 species
Smo96989 AtHPR1, AtTHO1,... RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Solyc01g096600.4.1 AtHPR1, AtTHO1,... component THOC1/HPR1 of mRNP trafficking THO subcomplex 0.04 OrthoFinder output from all 47 species
Tin_g02017 AtHPR1, AtTHO1,... component *(THOC1/HPR1) of mRNP trafficking THO... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021861 THO_THOC1 117 519
No external refs found!