1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g18973

Lfl_g18973 (RNPS1, SR45)


Aliases : RNPS1, SR45

Description : component *(RNPS1) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002814_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g18973

Target Alias Description ECC score Gene Family Method Actions
Adi_g015327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05804 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Als_g12115 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Aob_g29271 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Aop_g10362 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.07 OrthoFinder output from all 47 species
Ceric.19G041100.1 RNPS1, SR45,... component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021222.7 RNPS1, SR45 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Cre03.g164950 RNPS1, SR45 RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Dcu_g05318 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Gb_20779 RNPS1, SR45 component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
LOC_Os01g72890.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Len_g07514 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
MA_3280g0020 RNPS1, SR45 component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Msp_g10775 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Pir_g22284 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Pnu_g12858 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Sam_g14861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26477 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g36997 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Solyc10g005590.4.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.05 OrthoFinder output from all 47 species
Spa_g07702 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Spa_g10767 RNPS1, SR45 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01053 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e028289_P001 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 96 165
No external refs found!