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  5. Dde_g30301

Dde_g30301 (HEN2)


Aliases : HEN2

Description : RNA helicase component *(HEN2) of Nuclear Exosome Targeting (NEXT) activation complex & original description: none


Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g30301

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00200390 HEN2,... RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
AT1G59760 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 OrthoFinder output from all 47 species
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 OrthoFinder output from all 47 species
Adi_g022453 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Aev_g01540 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Aev_g17654 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Ala_g07801 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Aob_g06073 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Ceric.08G061100.1 HEN2, Ceric.08G061100 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Ceric.15G051600.1 Ceric.15G051600 RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.03 OrthoFinder output from all 47 species
Cre06.g289950 HEN2 RNA processing.RNA decay.exosome complex.associated... 0.01 OrthoFinder output from all 47 species
Dac_g24078 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation... 0.05 OrthoFinder output from all 47 species
Dcu_g18967 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.03 OrthoFinder output from all 47 species
Gb_30711 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.03 OrthoFinder output from all 47 species
LOC_Os02g06500.1 LOC_Os02g06500 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 OrthoFinder output from all 47 species
LOC_Os11g07500.1 HEN2, LOC_Os11g07500 RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 OrthoFinder output from all 47 species
Len_g58854 HEN2 RNA helicase component *(HEN2) of Nuclear Exosome... 0.04 OrthoFinder output from all 47 species
Pir_g18498 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Pnu_g07586 HEN2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g10573 No alias RNA helicase component *(MTR4) of TRAMP nucleolar... 0.03 OrthoFinder output from all 47 species
Smo174598 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder output from all 47 species
Zm00001e013693_P002 Zm00001e013693 RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 552 818
IPR001650 Helicase_C 411 496
IPR012961 Ski2/MTR4_C 845 1014
IPR011545 DEAD/DEAH_box_helicase_dom 86 232
No external refs found!