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  5. Dde_g20443

Dde_g20443


Description : component *(uS3) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g20443

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00219330 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AMTR_s00030p00157370 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
AT2G31610 No alias Ribosomal protein S3 family protein 0.03 OrthoFinder output from all 47 species
AT5G35530 No alias Ribosomal protein S3 family protein 0.06 OrthoFinder output from all 47 species
Adi_g083363 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ala_g20217 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Als_g19714 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g10053 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.12G046300.1 Ceric.12G046300 component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021462.41 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder output from all 47 species
Cre02.g102250 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Dac_g21380 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01015110001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01016775001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Gb_13623 No alias component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
Gb_26536 No alias component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g38000.1 LOC_Os03g38000 component RPS3 of SSU proteome 0.06 OrthoFinder output from all 47 species
LOC_Os07g41750.1 LOC_Os07g41750 component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
Lfl_g25979 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_10436283g0010 No alias component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp1g16730.1 No alias component RPS3 of SSU proteome 0.06 OrthoFinder output from all 47 species
Msp_g00955 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g61345 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c11_22640V3.1 Pp3c11_22640 Ribosomal protein S3 family protein 0.04 OrthoFinder output from all 47 species
Pp3c16_3760V3.1 Pp3c16_3760 Ribosomal protein S3 family protein 0.02 OrthoFinder output from all 47 species
Pp3c7_2620V3.1 Pp3c7_2620 Ribosomal protein S3 family protein 0.05 OrthoFinder output from all 47 species
Pp3c9_12170V3.1 Pp3c9_12170 Ribosomal protein S3 family protein 0.05 OrthoFinder output from all 47 species
Sam_g27040 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g27041 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo270414 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Smo438700 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Solyc07g041310.3.1 Solyc07g041310 component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc08g061843.1.1 Solyc08g061843 component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species
Spa_g10670 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g10672 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Spa_g30478 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g54393 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Tin_g04971 No alias component *(uS3) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e021687_P001 Zm00001e021687 component RPS3 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e035528_P001 Zm00001e035528 component RPS3 of SSU proteome 0.01 OrthoFinder output from all 47 species
Zm00001e040177_P002 Zm00001e040177 component RPS3 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 163 245
IPR004044 KH_dom_type_2 77 150
No external refs found!