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  5. Dde_g18148

Dde_g18148


Description : plastidial RNA processing factor *(PPR287) & original description: none


Gene families : OG0006591 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006591_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g18148
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g11417 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene44048.t1 Aspi01Gene44048 plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0074.g037533 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g13401 No alias plastidial RNA processing factor *(PPR287) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.03 OrthoFinder output from all 47 species
Gb_28778 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
LOC_Os08g09270.1 LOC_Os08g09270 plastidial RNA processing factor (PPR287) 0.03 OrthoFinder output from all 47 species
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.03 OrthoFinder output from all 47 species
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.04 OrthoFinder output from all 47 species
Nbi_g30607 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Sam_g37440 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e039973_P002 Zm00001e039973 plastidial RNA processing factor (PPR287) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 523 550
IPR002885 Pentatricopeptide_repeat 368 427
IPR002885 Pentatricopeptide_repeat 438 496
IPR002885 Pentatricopeptide_repeat 241 290
IPR002885 Pentatricopeptide_repeat 312 357
No external refs found!