1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g17423

Lfl_g17423


Description : RNA polymerase nuclear import factor *(RIMA) & original description: none


Gene families : OG0005503 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005503_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g17423

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00194360 evm_27.TU.AmTr_v1... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
Aop_g41676 No alias RNA polymerase nuclear import factor *(RIMA) & original... 0.02 OrthoFinder output from all 47 species
Ceric.11G079300.1 Ceric.11G079300 RNA polymerase nuclear import factor *(RIMA) & original... 0.02 OrthoFinder output from all 47 species
Dac_g14535 No alias RNA polymerase nuclear import factor *(RIMA) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os05g04370.1 LOC_Os05g04370 RIMA RNA polymerase nuclear import factor 0.03 OrthoFinder output from all 47 species
MA_6521877g0010 No alias RIMA RNA polymerase nuclear import factor 0.02 OrthoFinder output from all 47 species
Ore_g30429 No alias RNA polymerase nuclear import factor *(RIMA) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g06841 No alias RNA polymerase nuclear import factor *(RIMA) & original... 0.03 OrthoFinder output from all 47 species
Sam_g11863 No alias RNA polymerase nuclear import factor *(RIMA) & original... 0.03 OrthoFinder output from all 47 species
Sam_g11864 No alias RNA polymerase nuclear import factor *(RIMA) & original... 0.02 OrthoFinder output from all 47 species
Solyc01g101010.4.1 Solyc01g101010 RIMA RNA polymerase nuclear import factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR007308 Rtr1/RPAP2_dom 36 109
No external refs found!