1. Home
  2. Species
  3. Lygodium flexuosum
  4. Sequence
  5. Lfl_g17419

Lfl_g17419 (ATSIG5, SIG5, SIGE)


Aliases : ATSIG5, SIG5, SIGE

Description : basal Sigma-type transcription factor & original description: none


Gene families : OG0006267 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006267_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g17419
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00253000 ATSIG5, SIG5,... RNA polymerase sigma factor sigE,... 0.03 OrthoFinder output from all 47 species
AT5G24120 ATSIG5, SIG5, SIGE sigma factor E 0.04 OrthoFinder output from all 47 species
Als_g20817 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Aob_g18205 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Aop_g08605 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene21613.t1 ATSIG5, SIG5,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Cba_g23756 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Ceric.02G065100.1 ATSIG5, SIG5,... basal Sigma-type transcription factor & original... 0.07 OrthoFinder output from all 47 species
GSVIVT01028717001 ATSIG5, SIG5, SIGE RNA biosynthesis.organelle... 0.03 OrthoFinder output from all 47 species
LOC_Os05g50930.1 ATSIG5, SIG5,... basal transcription factor (Sigma) 0.06 OrthoFinder output from all 47 species
Len_g00665 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Msp_g47380 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ppi_g42839 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g19097 No alias basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Tin_g20273 ATSIG5, SIG5, SIGE basal Sigma-type transcription factor & original... 0.05 OrthoFinder output from all 47 species
Zm00001e032596_P002 ATSIG5, SIG5,... basal transcription factor (Sigma) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription initiation IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004089 carbonate dehydratase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 461 514
IPR007627 RNA_pol_sigma70_r2 293 358
No external refs found!