Aliases : AGL7, AP1
Description : MADS/AGL-type transcription factor & original description: none
Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Dde_g14634 | |
Cluster | HCCA: Cluster_157 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G77950 | AGL67 | AGAMOUS-like 67 | 0.03 | OrthoFinder output from all 47 species | |
Als_g11010 | AGL16 | MADS/AGL-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene17771.t1 | SHP2, AGL5,... | MADS/AGL-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0684.g082058 | AGL21 | MADS/AGL-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.04G082300.1 | AGL28, Ceric.04G082300 | MADS/AGL-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os10g39130.1 | GL19, AGL19,... | transcription factor (MADS/AGL) | 0.03 | OrthoFinder output from all 47 species | |
Ore_g42970 | AGL30 | MADS/AGL-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ore_g44137 | SHP2, AGL5 | MADS/AGL-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g12246 | AGL30 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g59142 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0014.g006240 | No alias | not classified & original description: CDS=1-240 | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g093960.3.1 | AGL6, Solyc01g093960 | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e015728_P001 | AGL16, Zm00001e015728 | transcription factor (MADS/AGL) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e036159_P001 | AGL24, Zm00001e036159 | transcription factor (MADS/AGL) | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0046983 | protein dimerization activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000966 | RNA 5'-end processing | IEP | HCCA |
BP | GO:0001682 | tRNA 5'-leader removal | IEP | HCCA |
MF | GO:0005509 | calcium ion binding | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
BP | GO:0008033 | tRNA processing | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
CC | GO:0030677 | ribonuclease P complex | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0099116 | tRNA 5'-end processing | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
CC | GO:1902555 | endoribonuclease complex | IEP | HCCA |
CC | GO:1905348 | endonuclease complex | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002100 | TF_MADSbox | 40 | 87 |
No external refs found! |