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  5. Dde_g11205

Dde_g11205 (PTAC17)


Aliases : PTAC17

Description : cofactor of plastid-encoded RNA polymerase *(TAC17) & original description: none


Gene families : OG0001348 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001348_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g11205
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 PTAC17,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
AT1G15730 No alias Cobalamin biosynthesis CobW-like protein 0.02 OrthoFinder output from all 47 species
AT1G26520 No alias Cobalamin biosynthesis CobW-like protein 0.02 OrthoFinder output from all 47 species
Adi_g057640 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.04 OrthoFinder output from all 47 species
Aev_g01041 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Ala_g23339 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.11 OrthoFinder output from all 47 species
Aob_g01393 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.04 OrthoFinder output from all 47 species
Aop_g09671 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Cre16.g692901 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.01 OrthoFinder output from all 47 species
Ehy_g22577 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.04 OrthoFinder output from all 47 species
Gb_13256 PTAC17 TAC17 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
LOC_Os02g55630.1 PTAC17, LOC_Os02g55630 TAC17 cofactor of plastid-encoded RNA polymerase 0.06 OrthoFinder output from all 47 species
Len_g14519 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Len_g48260 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Mp1g05690.1 No alias TAC17 cofactor of plastid-encoded RNA polymerase 0.05 OrthoFinder output from all 47 species
Ore_g26422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13366 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014804 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0495.g027428 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.08 OrthoFinder output from all 47 species
Sam_g27089 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15394 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Zm00001e016143_P001 Zm00001e016143 TAC17 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011629 CobW-like_C 377 469
IPR003495 CobW/HypB/UreG_dom 106 291
No external refs found!