1. Home
  2. Species
  3. Davallia denticulata
  4. Sequence
  5. Dde_g09078

Dde_g09078 (ATCHR12)


Aliases : ATCHR12

Description : SMARCA component *(SYD/BRM/MINU) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g09078
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.03 OrthoFinder output from all 47 species
Ala_g36219 ATCHR12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22693 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Als_g59182 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Aob_g29989 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Aop_g20304 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0129.g048917 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ceric.1Z205000.1 PKR1, CHR4,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000128.11 CHR17 ISWI chromatin-remodeling complex ATPase CHR17... 0.02 OrthoFinder output from all 47 species
Ehy_g05070 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Ehy_g10042 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01012117001 PKR1, CHR4 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder output from all 47 species
GSVIVT01017921001 ATCHR12 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Gb_27153 ATCHR12 chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species
LOC_Os01g27040.1 CHR17, LOC_Os01g27040 chromatin remodeling factor (Iswi) 0.02 OrthoFinder output from all 47 species
LOC_Os06g08480.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
LOC_Os07g31450.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
LOC_Os07g46590.1 CHR5, LOC_Os07g46590 chromatin remodeling factor (Chd1). component CHR5 of... 0.02 OrthoFinder output from all 47 species
Mp1g05480.1 CHR5 chromatin remodeling factor (Chd1). component CHR5 of... 0.03 OrthoFinder output from all 47 species
Mp2g26680.1 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Mp8g17660.1 ATCHR12 chromatin remodeling factor (Snf2) 0.02 OrthoFinder output from all 47 species
Msp_g13222 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12701 CHR11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g16726 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Pir_g52065 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13843 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14615 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g36172 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g062780.4.1 CHR01, CHR1,... chromatin remodeling factor (DDM1) 0.03 OrthoFinder output from all 47 species
Solyc06g054560.3.1 CHR11, Solyc06g054560 chromatin remodeling factor (Iswi) 0.02 OrthoFinder output from all 47 species
Tin_g08468 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e040406_P002 ATCHR12, Zm00001e040406 chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR029295 SnAC 1158 1223
IPR000330 SNF2_N 645 933
IPR001650 Helicase_C 954 1067
No external refs found!