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Description : component *(SOP1) of PAXT RNA-exosome-activation complex & original description: none
Gene families : OG0004256 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004256_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Lfl_g16590 | |
| Cluster | HCCA: Cluster_88 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G21580 | No alias | Zinc finger C-x8-C-x5-C-x3-H type family protein | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g086844 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.07 | OrthoFinder output from all 47 species | |
| Ala_g33279 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.11 | OrthoFinder output from all 47 species | |
| Aob_g26394 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g14012 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0010.g012372 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.23G086900.1 | Ceric.23G086900 | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.14 | OrthoFinder output from all 47 species | |
| Dcu_g09581 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01008802001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.07 | OrthoFinder output from all 47 species | |
| Gb_37874 | No alias | RNA degradation surveillance factor (SOP1) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g43120.1 | LOC_Os06g43120 | RNA degradation surveillance factor (SOP1) | 0.07 | OrthoFinder output from all 47 species | |
| Len_g41224 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| MA_140138g0020 | No alias | RNA degradation surveillance factor (SOP1) | 0.03 | OrthoFinder output from all 47 species | |
| Mp6g05720.1 | No alias | RNA degradation surveillance factor (SOP1) | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g23885 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g44276 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g15166 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g15340 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g22673 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g057990.4.1 | Solyc04g057990 | RNA degradation surveillance factor (SOP1) | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g22203 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g45442 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Tin_g16673 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e037509_P004 | Zm00001e037509 | RNA degradation surveillance factor (SOP1) | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003729 | mRNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | HCCA |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006473 | protein acetylation | IEP | HCCA |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
| MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| BP | GO:0016573 | histone acetylation | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | HCCA |
| CC | GO:0035145 | exon-exon junction complex | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0043543 | protein acylation | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |