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  5. Dde_g07707

Dde_g07707 (PDF2)


Aliases : PDF2

Description : HD-ZIP IV-type transcription factor & original description: none


Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g07707

Target Alias Description ECC score Gene Family Method Actions
Aop_g24568 ANL2, AHDP HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene02691.t1 PDF2, Aspi01Gene02691 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07120.t1 PDF2, Aspi01Gene07120 HD-ZIP IV-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene55386.t1 ATML1, Aspi01Gene55386 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene70273.t1 PDF2, Aspi01Gene70273 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67903 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14181 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23976 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g35701 HDG2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14381 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g15698 ATML1 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_38472g0010 HDG1, HD-GL2-1 transcription factor (HD-ZIP IV) 0.02 OrthoFinder output from all 47 species
Msp_g21421 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g23330 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g09188 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56953 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005253 ATML1 HD-ZIP IV-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sam_g19433 No alias HD-ZIP IV-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Solyc08g076370.3.1 HDG5, HB-7,... transcription factor (HD-ZIP IV) 0.03 OrthoFinder output from all 47 species
Tin_g01261 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g28196 PDF2 HD-ZIP IV-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 599 824
IPR001356 Homeobox_dom 397 451
IPR001356 Homeobox_dom 96 151
No external refs found!