Dde_g05238 (ATTRB1, TRB1)

Aliases : ATTRB1, TRB1

Description : PRC2-recruiting factor (TRB) of PRC2 histone methylation complex & original description: none

Gene families : OG0000994 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000994_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dde_g05238

Target	Alias	Description	ECC score	Gene Family Method
Cba_g72176	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.02	OrthoFinder output from all 47 species
Dcu_g44110	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.03	OrthoFinder output from all 47 species
Len_g16921	ATTRB1, TRB1	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.03	OrthoFinder output from all 47 species
Ppi_g10988	ATTRB1, TRB1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005172	ATTRB1, TRB1	not classified & original description: CDS=343-1284	0.02	OrthoFinder output from all 47 species
Sam_g39657	No alias	PRC2-recruiting factor (TRB) of PRC2 histone methylation...	0.02	OrthoFinder output from all 47 species
Zm00001e028149_P001	Zm00001e028149	transcription factor (MYB-related)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008649	rRNA methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
BP	GO:0031167	rRNA methylation	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
MF	GO:0051087	chaperone binding	IEP	HCCA
MF	GO:0070037	rRNA (pseudouridine) methyltransferase activity	IEP	HCCA
BP	GO:0070475	rRNA base methylation	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	7	57
IPR005818	Histone_H1/H5_H15	117	173

External Links

No external refs found!