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Aliases : VAC1, ECB2, ATECB2
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00111p00107400 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At4g21065... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00170p00032020 | OTP86,... | Pentatricopeptide repeat-containing protein At5g16860... | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g004424 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g005619 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g014776 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g034009 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g036834 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g058156 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g060792 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g061031 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g061193 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g098198 | SLO1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g103876 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g29185 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g07468 | EMB2261 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g36200 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g03223 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g05094 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g05105 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g05719 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g05758 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g06397 | OTP86 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g06911 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g10935 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g18066 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g18410 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g19310 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g26572 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30899 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g32865 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g54166 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g54705 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g54957 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g55287 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g58582 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g27914 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g33771 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g16819 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g17754 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g21628 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g27203 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g31523 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g67673 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene21963.t1 | Aspi01Gene21963 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0004.g008863 | EMB2758 | not classified & original description: CDS=1-2292 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g009689 | No alias | not classified & original description: CDS=1-2529 | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0035.g025537 | No alias | ssDNA-binding protein *(OSB) & original description: CDS=167-2242 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0052.g031587 | No alias | not classified & original description: CDS=171-3077 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0092.g043152 | No alias | not classified & original description: CDS=1-744 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g02672 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g05970 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g34918 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g76621 | EMB2758 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.03G039400.1 | Ceric.03G039400 | not classified & original description: pacid=50571919... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.04G034300.1 | VAC1, ECB2,... | not classified & original description: pacid=50630708... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.10G013000.1 | EMB2758, Ceric.10G013000 | not classified & original description: pacid=50613337... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.10G047500.1 | Ceric.10G047500 | not classified & original description: pacid=50612222... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.22G064700.1 | Ceric.22G064700 | not classified & original description: pacid=50614857... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.27G036800.1 | VAC1, ECB2,... | not classified & original description: pacid=50605276... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.29G060200.1 | Ceric.29G060200 | not classified & original description: pacid=50624987... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.34G063100.1 | Ceric.34G063100 | not classified & original description: pacid=50623551... | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g18423 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g44312 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g08260 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g08264 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g38682 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g05964 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g06677 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g22734 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g28699 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Gb_03578 | OTP84 | Pentatricopeptide repeat-containing protein At3g57430,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g74600.1 | CRR22, LOC_Os01g74600 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g58100.1 | OTP85, LOC_Os03g58100 | RNA editing factor (OTP85) | 0.04 | OrthoFinder output from all 47 species | |
| Len_g05316 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Len_g14930 | No alias | not classified & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Len_g19007GO:0008233 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g24341 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g05723 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g05734 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g07117 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g14572 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g29257 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g38033 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g04332 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g14847 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g23175 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g28529 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g28763 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g30310 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g34545 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g44897 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Msp_g48606 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g04844 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g05699 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g22740 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g24038 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g12907 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g40943 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g13015 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g13575 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g20232 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g41187 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g57929 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Pir_g64477 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g65182 | CRR22 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Pnu_g19854 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g04648 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g05345 | EMB2261 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g06849 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g06968 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g07011 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g07521 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g16488 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g18809 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g18869 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g32253 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g32959 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g53684 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g56752 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g59340 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g61249 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0044.g012960 | No alias | not classified & original description: CDS=516-2783 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0057.g014790 | No alias | not classified & original description: CDS=1-2049 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0071.g016873 | No alias | not classified & original description: CDS=1-2589 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0117.g021130 | No alias | not classified & original description: CDS=1-2961 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0144.g022971 | No alias | not classified & original description: CDS=343-1173 | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g02933 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g03385 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g11203 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g15563 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g39953 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g025700.2.1 | Solyc03g025700 | OTP70 plastidial RNA splicing factor | 0.03 | OrthoFinder output from all 47 species | |
| Solyc12g006575.1.1 | OTP82, Solyc12g006575 | RNA editing factor (OTP82) | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g06871 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g20286 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g24192 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g31188 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g33289 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g53894 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g05944 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g08446 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g13336 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g26544 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g28558 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g45955 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e015358_P001 | Zm00001e015358 | Pentatricopeptide repeat-containing protein At5g39350... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006629 | lipid metabolic process | IEP | HCCA |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0015631 | tubulin binding | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0140110 | transcription regulator activity | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 396 | 443 |
| IPR002885 | Pentatricopeptide_repeat | 294 | 340 |
| IPR002885 | Pentatricopeptide_repeat | 191 | 238 |
| IPR002885 | Pentatricopeptide_repeat | 89 | 138 |
| IPR002885 | Pentatricopeptide_repeat | 370 | 393 |
| IPR002885 | Pentatricopeptide_repeat | 166 | 188 |
| IPR002885 | Pentatricopeptide_repeat | 473 | 495 |
| No external refs found! |