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  5. Dde_g00839

Dde_g00839


Description : ubiquitin-proteasome shuttle factor *(DSK2) & original description: none


Gene families : OG0001912 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001912_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dde_g00839

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01003842001 No alias Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01003843001 DSK2 Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01023890001 DSK2 Ubiquitin domain-containing protein DSK2b OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Len_g10969 No alias ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Mp1g23030.1 DSK2 autophagic adaptor protein (DSK2) 0.03 OrthoFinder output from all 47 species
Ore_g25539 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.03 OrthoFinder output from all 47 species
Ore_g33853 DSK2 ubiquitin-proteasome shuttle factor *(DSK2) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e038110_P003 DSK2, Zm00001e038110 autophagic adaptor protein (DSK2) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 17 85
IPR015940 UBA 507 543
No external refs found!