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  5. Aop_g42675

Aop_g42675 (At-RS41, RS41, ATRSP41)


Aliases : At-RS41, RS41, ATRSP41

Description : RNA splicing factor *(RS31/40/41) & original description: none


Gene families : OG0002134 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g42675
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT5G52040 At-RS41, RS41, ATRSP41 RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Azfi_s0126.g048647 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original... 0.04 OrthoFinder output from all 47 species
Cre16.g674250 At-RS31, RS31,... RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
MA_84361g0010 At-RS41, RS41, ATRSP41 RS31/40/41 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0082.g018097 At-RS41, RS41, ATRSP41 RNA splicing factor *(RS31/40/41) & original... 0.03 OrthoFinder output from all 47 species
Solyc10g009330.3.1 At-RS31, RS31,... RS31/40/41 RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 117 179
IPR000504 RRM_dom 23 82
No external refs found!