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  5. Lfl_g12296

Lfl_g12296


Description : not classified & original description: none


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g12296

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00175460 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AMTR_s00087p00144100 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Ala_g24751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03583 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04938 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene27703.t1 Aspi01Gene27703 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13057 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g13364 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G033700.1 Ceric.03G033700 not classified & original description: pacid=50572646... 0.03 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01919 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05040 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07812 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015774001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01018805001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_21243 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g45930.3 LOC_Os04g45930 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os07g08320.1 LOC_Os07g08320 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os07g27110.1 LOC_Os07g27110 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os10g08570.1 LOC_Os10g08570 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g10424 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10436637g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10436637g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_169053g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_8142g0020 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g48146 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05005 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ore_g44161 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g21786 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22231 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g52296 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g088800.4.1 Solyc01g088800 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc02g062290.2.1 Solyc02g062290 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc10g062180.2.1 Solyc10g062180 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc10g076870.2.1 Solyc10g076870 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g07984 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041355_P001 Zm00001e041355 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 525 589
IPR000504 RRM_dom 428 491
IPR000504 RRM_dom 348 417
No external refs found!