Aop_g31214 (RAD23B, RAD23)

Aliases : RAD23B, RAD23

Description : ubiquitin-proteasome shuttle factor *(RAD23) & original description: none

Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g31214
Cluster	HCCA: Cluster_314

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00156p00078120	RAD23D,...	Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
Als_g38438	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Als_g63686	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Cre08.g366400	RAD23B, RAD23	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
LOC_Os06g15360.1	RAD23-3, RAD23C,...	shuttle protein (RAD23)	0.04	OrthoFinder output from all 47 species
LOC_Os09g24200.1	RAD23D, LOC_Os09g24200	shuttle protein (RAD23)	0.02	OrthoFinder output from all 47 species
Len_g13341	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Len_g15636	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Len_g27857	RAD23A	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Mp1g26290.1	RAD23B, RAD23	shuttle protein (RAD23)	0.03	OrthoFinder output from all 47 species
Msp_g06770	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Msp_g08029	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Nbi_g04293	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.04	OrthoFinder output from all 47 species
Ore_g43759	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g63807	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Spa_g18087	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.07	OrthoFinder output from all 47 species
Tin_g08949	RAD23-3, RAD23C	ubiquiTin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Tin_g19292	RAD23B, RAD23	ubiquiTin-proteasome shuttle factor *(RAD23) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e025088_P005	RAD23B, RAD23,...	shuttle protein (RAD23)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004486	methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity	IEP	HCCA
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005885	Arp2/3 protein complex	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
CC	GO:0008303	caspase complex	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
CC	GO:0016272	prefoldin complex	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	HCCA
CC	GO:0042765	GPI-anchor transamidase complex	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
BP	GO:0045048	protein insertion into ER membrane	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1905369	endopeptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	3	76
IPR015360	XPC-bd	279	334
IPR015940	UBA	361	396
IPR015940	UBA	166	204

External Links

No external refs found!

Aop_g31214 (RAD23B, RAD23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation