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  5. Aop_g30834

Aop_g30834


Description : RecA-activity effector *(RadA) & original description: none


Gene families : OG0003800 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003800_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g30834

Target Alias Description ECC score Gene Family Method Actions
Adi_g052199 No alias RecA-activity effector *(RadA) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g28587 No alias RecA-activity effector *(RadA) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G082500.1 Ceric.04G082500 RecA-activity effector *(RadA) & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g06273 No alias RecA-activity effector *(RadA) & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g38249 No alias RecA-activity effector *(RadA) & original description: none 0.02 OrthoFinder output from all 47 species
MA_84997g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g47628 No alias RecA-activity effector *(RadA) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19291 No alias RecA-activity effector *(RadA) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26929 No alias RecA-activity effector *(RadA) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08482 No alias RecA-activity effector *(RadA) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!