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  5. Aop_g30493

Aop_g30493 (PTAC12, HMR)


Aliases : PTAC12, HMR

Description : transcriptional coactivator *(HEMERA) & original description: none


Gene families : OG0007916 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g30493
Cluster HCCA: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
AT2G34640 PTAC12, HMR plastid transcriptionally active 12 0.03 OrthoFinder output from all 47 species
Cba_g03257 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.03 OrthoFinder output from all 47 species
Dac_g11819 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.04 OrthoFinder output from all 47 species
LOC_Os01g56350.3 PTAC12, HMR,... PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.02 OrthoFinder output from all 47 species
Pir_g57957 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g42137 PTAC12, HMR transcriptional coactivator *(HEMERA) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e019697_P001 PTAC12, HMR,... PAP5/TAC12 cofactor of plastid-encoded RNA polymerase.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!