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  5. Aop_g30450

Aop_g30450 (GAMMA-H2AX, H2AXB,...)


Aliases : GAMMA-H2AX, H2AXB, HTA3, G-H2AX

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g30450

Target Alias Description ECC score Gene Family Method Actions
Adi_g003557 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011159 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011169 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011320 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011321 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g047730 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g070713 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078410 HTA13 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082134 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086789 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g26221 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14593 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05288 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13886.t1 HTA6, Aspi01Gene13886 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19828.t1 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48040.t1 HTA7, Aspi01Gene48040 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Dac_g13937 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g34896 GAMMA-H2AX,... histone *(H2A) & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01002735001 RAT5, HTA1, ATHTA1 Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
GSVIVT01025019001 HTA12 Chromatin organisation.histones.H2A-type histone 0.03 OrthoFinder output from all 47 species
Gb_25942 No alias histone (H2A) 0.04 OrthoFinder output from all 47 species
LOC_Os01g31800.1 HTA12, LOC_Os01g31800 histone (H2A) 0.02 OrthoFinder output from all 47 species
LOC_Os03g17100.1 HTA12, LOC_Os03g17100 histone (H2A) 0.02 OrthoFinder output from all 47 species
LOC_Os08g33100.1 HTA2, LOC_Os08g33100 histone (H2A) 0.02 OrthoFinder output from all 47 species
Len_g20304 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g39719 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39892 HTA10 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g00760.1 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Mp3g00840.1 HTA10 histone (H2A) 0.02 OrthoFinder output from all 47 species
Mp3g02370.1 HTA13 histone (H2A) 0.02 OrthoFinder output from all 47 species
Msp_g06768 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g11191 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g29485 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g00069 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11307 HTA10 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g29875 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03457 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025887 GAMMA-H2AX,... histone *(H2A) & original description: CDS=1-531 0.03 OrthoFinder output from all 47 species
Sam_g10765 No alias histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g099410.3.1 HTA7, Solyc01g099410 histone (H2A) 0.02 OrthoFinder output from all 47 species
Solyc06g084430.4.1 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species
Spa_g03104 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03105 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g03522 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16293 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g32347 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45749 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11136 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 133 166
IPR007125 Histone_H2A/H2B/H3 35 130
No external refs found!