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  5. Aop_g29550

Aop_g29550 (AGO1)


Aliases : AGO1

Description : not classified & original description: none


Gene families : OG0000157 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g29550
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00204110 AGO9,... Protein argonaute 4B OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Adi_g016083 PNH, AGO10, ZLL not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g016084 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113326 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Als_g17789 AGO1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.16G078000.1 PNH, AGO10, ZLL,... not classified & original description: pacid=50589285... 0.02 OrthoFinder output from all 47 species
Dac_g29067 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.03 OrthoFinder output from all 47 species
Ehy_g06133 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 OrthoFinder output from all 47 species
Len_g40869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_118377g0010 AGO1 RIS-Complex miRNA recruiting factor (AGO1) 0.06 OrthoFinder output from all 47 species
Mp1g23190.1 AGO9 siRNA-integrating factor (AGO) 0.02 OrthoFinder output from all 47 species
Pnu_g23416 PNH, AGO10, ZLL not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017428 AGO1 miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 OrthoFinder output from all 47 species
Spa_g51306 AGO1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57163 AGO1 regulatory protein *(AGO7) of transacting siRNA pathway... 0.02 OrthoFinder output from all 47 species
Zm00001e025496_P001 AGO4, OCP11,... siRNA-integrating factor (AGO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003100 PAZ_dom 298 403
IPR032474 Argonaute_N 77 206
IPR014811 ArgoL1 218 265
IPR003165 Piwi 560 892
IPR032473 Argonaute_Mid_dom 470 547
No external refs found!