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  5. Aop_g29506

Aop_g29506 (ATX4, SDG16)


Aliases : ATX4, SDG16

Description : not classified & original description: none


Gene families : OG0006147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006147_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g29506

Target Alias Description ECC score Gene Family Method Actions
Ala_g37430 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0215.g058370 SDG30, ATX2 not classified & original description: CDS=559-6048 0.09 OrthoFinder output from all 47 species
Dcu_g37518 SDG30, ATX2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g27002 ATX4, SDG16 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g21473 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035925001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_26322 SET29, SDG29, ATX5 Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os09g38440.1 SDG30, ATX2,... Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g49218 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10436998g0010 No alias Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_10436998g0020 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp1g26800.1 SDG30, ATX2 Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Msp_g15718 SDG30, ATX2 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g11852 ATX4, SDG16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29454 ATX1, SDG27 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo424372 No alias Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g22206 SDG30, ATX2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20520 ATX4, SDG16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e010324_P001 SDG30, ATX2,... Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR001214 SET_dom 1900 2007
IPR032308 TDBD 270 317
No external refs found!