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  5. Lfl_g11544

Lfl_g11544 (GC6, MAG4)


Aliases : GC6, MAG4

Description : Golgin-type membrane tethering protein *(GC6) & original description: none


Gene families : OG0005705 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005705_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g11544
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Aev_g12692 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.02 OrthoFinder output from all 47 species
Als_g09657 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.04 OrthoFinder output from all 47 species
Aob_g25742 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.07 OrthoFinder output from all 47 species
Dcu_g03141 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01000649001 GC6, MAG4 Vesicle trafficking.target membrane tethering.Golgi... 0.05 OrthoFinder output from all 47 species
LOC_Os12g35360.1 GC6, MAG4, LOC_Os12g35360 golgin (GC6) 0.05 OrthoFinder output from all 47 species
Len_g21529 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.04 OrthoFinder output from all 47 species
MA_428209g0010 GC6, MAG4 Golgin candidate 6 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Mp6g05640.1 GC6, MAG4 golgin (GC6) 0.02 OrthoFinder output from all 47 species
Nbi_g22055 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.03 OrthoFinder output from all 47 species
Ore_g20921 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.05 OrthoFinder output from all 47 species
Ppi_g29701 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009043 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010627 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.02 OrthoFinder output from all 47 species
Sam_g12548 No alias Golgin-type membrane tethering protein *(GC6) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g084490.1.1 GC6, MAG4, Solyc02g084490 golgin (GC6) 0.04 OrthoFinder output from all 47 species
Solyc08g081410.3.1 GC6, MAG4, Solyc08g081410 golgin (GC6) 0.02 OrthoFinder output from all 47 species
Spa_g46532 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.02 OrthoFinder output from all 47 species
Tin_g01257 GC6, MAG4 Golgin-type membrane tethering protein *(GC6) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e018276_P001 GC6, MAG4, Zm00001e018276 golgin (GC6) 0.02 OrthoFinder output from all 47 species
Zm00001e018282_P001 GC6, MAG4, Zm00001e018282 golgin (GC6) 0.1 OrthoFinder output from all 47 species
Zm00001e039709_P004 GC6, MAG4, Zm00001e039709 golgin (GC6) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006953 Vesicle_Uso1_P115_head 384 639
IPR006955 Uso1_p115_C 819 947
No external refs found!