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  5. Aop_g29218

Aop_g29218


Description : not classified & original description: none


Gene families : OG0000185 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000185_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g29218
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265700 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Adi_g008962 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g012562 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g028830 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g040691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054729 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g075983 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g106357 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g115536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117114 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09715 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0090.g042794 No alias not classified & original description: CDS=151-1857 0.03 OrthoFinder output from all 47 species
Cba_g03276 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07339 HEN4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g12024 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G007100.1 Ceric.14G007100 not classified & original description: pacid=50632910... 0.06 OrthoFinder output from all 47 species
Ceric.14G023600.1 Ceric.14G023600 not classified & original description: pacid=50632924... 0.02 OrthoFinder output from all 47 species
Ceric.25G027100.1 Ceric.25G027100 not classified & original description: pacid=50594480... 0.04 OrthoFinder output from all 47 species
Ceric.32G061200.1 Ceric.32G061200 not classified & original description: pacid=50597564... 0.03 OrthoFinder output from all 47 species
Dac_g11897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01662 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04903 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13081 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Ehy_g18057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01031037001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os01g13470.1 LOC_Os01g13470 RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
LOC_Os06g23460.1 LOC_Os06g23460 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Len_g07805 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18926 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g19668 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g36497 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g10062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433640g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_12604g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
MA_20325g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 OrthoFinder output from all 47 species
Nbi_g05364 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03216 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03833 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06520 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g09995 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10011 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10012 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g15528 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g21139 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25271 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40850 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g41373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37389 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g01057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16334 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g11931 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12504 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g13844 No alias regulatory protein *(RCF3) of HYL1-phosphorylation &... 0.02 OrthoFinder output from all 47 species
Sam_g16383 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g35222 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g067210.3.1 Solyc02g067210 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc03g034200.3.1 Solyc03g034200 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc04g077060.3.1 Solyc04g077060 RNA-binding KH domain-containing protein RCF3... 0.03 OrthoFinder output from all 47 species
Solyc05g007810.3.1 Solyc05g007810 RNA-binding KH domain-containing protein RCF3... 0.04 OrthoFinder output from all 47 species
Solyc08g048500.3.1 Solyc08g048500 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g22547 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g26299 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g39448 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10773 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004486_P005 Zm00001e004486 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e037033_P001 Zm00001e037033 RNA-binding KH domain-containing protein RCF3... 0.05 OrthoFinder output from all 47 species
Zm00001e039986_P003 Zm00001e039986 KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 283 348
IPR004088 KH_dom_type_1 53 105
IPR004088 KH_dom_type_1 423 475
IPR004088 KH_dom_type_1 688 751
IPR004088 KH_dom_type_1 507 574
No external refs found!