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  5. Aop_g27051

Aop_g27051 (SPT16)


Aliases : SPT16

Description : component *(SPT16) of FACT histone chaperone complex & original description: none


Gene families : OG0002057 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002057_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g27051
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT4G10710 SPT16 global transcription factor C 0.03 OrthoFinder output from all 47 species
Adi_g049276 SPT16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13439 SPT16 component *(SPT16) of FACT histone chaperone complex &... 0.04 OrthoFinder output from all 47 species
LOC_Os12g26030.1 SPT16, LOC_Os12g26030 component SPT16 of FACT histone chaperone complex 0.02 OrthoFinder output from all 47 species
MA_10427450g0010 SPT16 component SPT16 of FACT histone chaperone complex 0.04 OrthoFinder output from all 47 species
MA_10430230g0020 SPT16 component SPT16 of FACT histone chaperone complex 0.02 OrthoFinder output from all 47 species
Mp1g28760.1 SPT16 component SPT16 of FACT histone chaperone complex 0.06 OrthoFinder output from all 47 species
Ore_g02470 SPT16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16028 No alias component *(SPT16) of FACT histone chaperone complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR013719 RTT106/SPT16-like_middle_dom 829 914
IPR000994 Pept_M24 197 430
IPR013953 FACT_Spt16 550 701
IPR029148 FACT-Spt16_Nlobe 19 181
No external refs found!