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  5. Aop_g24699

Aop_g24699 (LOP1, TRN1)


Aliases : LOP1, TRN1

Description : not classified & original description: none


Gene families : OG0000350 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000350_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g24699

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00138540 LOP1, TRN1,... Protein TORNADO 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Aev_g19557 LOP1, TRN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26355 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene68465.t1 LOP1, TRN1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G016000.1 Ceric.18G016000 not classified & original description: pacid=50622446... 0.04 OrthoFinder output from all 47 species
Ceric.18G016100.1 LOP1, TRN1,... not classified & original description: pacid=50621243... 0.03 OrthoFinder output from all 47 species
Ceric.18G016400.1 Ceric.18G016400 not classified & original description: pacid=50620952... 0.03 OrthoFinder output from all 47 species
Dac_g40231 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g40627 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g40628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16004 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g30822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g14153 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_94605g0010 LOP1, TRN1 Protein TORNADO 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g14064 LOP1, TRN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g15715 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32964 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13475 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g16496 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20985 LOP1, TRN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR032171 COR 646 793
No external refs found!