Aop_g19661

Description : nucleocytoplasmic import karyopherin *(IMB1) & original description: none

Gene families : OG0001300 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001300_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aop_g19661
Cluster	HCCA: Cluster_281

Target	Alias	Description	ECC score	Gene Family Method
AT5G53480	No alias	ARM repeat superfamily protein	0.03	OrthoFinder output from all 47 species
Ala_g03719	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Als_g27082	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.06	OrthoFinder output from all 47 species
Dde_g10474	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01038575001	No alias	Protein translocation.nucleus.nucleocytoplasmic...	0.04	OrthoFinder output from all 47 species
Gb_35028	No alias	IMB1 nucleocytoplasmic import karyopherin	0.03	OrthoFinder output from all 47 species
Lfl_g34606	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
MA_12771g0010	No alias	IMB1 nucleocytoplasmic import karyopherin	0.02	OrthoFinder output from all 47 species
Pp3c11_26710V3.1	Pp3c11_26710	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
Solyc03g082940.3.1	Solyc03g082940	IMB1 nucleocytoplasmic import karyopherin	0.03	OrthoFinder output from all 47 species
Solyc06g052030.3.1	Solyc06g052030	IMB1 nucleocytoplasmic import karyopherin	0.02	OrthoFinder output from all 47 species
Spa_g12818	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Tin_g04168	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species
Tin_g06671	No alias	nucleocytoplasmic import karyopherin *(IMB1) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0031267	small GTPase binding	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0017119	Golgi transport complex	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001494	Importin-beta_N	23	102

External Links

No external refs found!

Aop_g19661

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation