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  5. Aop_g19581

Aop_g19581


Description : component *(PININ) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0004599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g19581

Target Alias Description ECC score Gene Family Method Actions
AT1G15200 No alias protein-protein interaction regulator family protein 0.02 OrthoFinder output from all 47 species
Als_g09559 No alias component *(PININ) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Aspi01Gene37717.t1 Aspi01Gene37717 component *(PININ) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ceric.07G024200.1 Ceric.07G024200 component *(PININ) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Gb_25268 No alias component PININ of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
LOC_Os03g49520.1 LOC_Os03g49520 component PININ of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Lfl_g08493 No alias component *(PININ) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Mp4g01130.1 No alias component PININ of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Pnu_g06266 No alias component *(PININ) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ppi_g15018 No alias component *(PININ) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g19689 No alias component *(PININ) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Solyc01g104560.3.1 Solyc01g104560 component PININ of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Spa_g10046 No alias component *(PININ) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Tin_g10098 No alias component *(PININ) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e005379_P001 Zm00001e005379 component PININ of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Zm00001e012229_P001 Zm00001e012229 component PININ of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007029 endoplasmic reticulum organization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006786 Pinin_SDK_MemA 172 300
No external refs found!