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  5. Aop_g19469

Aop_g19469


Description : regulatory protein *(LARP6) of mRNA quality control & original description: none


Gene families : OG0002191 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002191_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aop_g19469
Cluster HCCA: Cluster_336

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00125170 evm_27.TU.AmTr_v1... La-related protein 6B OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cba_g67877 No alias regulatory protein *(LARP6) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Dac_g07935 No alias regulatory protein *(LARP6) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
GSVIVT01038251001 No alias La-related protein 6B OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Pir_g09715 No alias regulatory protein *(LARP6) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Zm00001e019774_P001 Zm00001e019774 La-related protein 6A OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 475 532
No external refs found!